Chapter 12 streams AND bento software for mac file I/O 515.
PDF Article, slides PPT, optimal Seed Solver: Optimizing Seed Selection in Read Mapping.
Data Structures and Algorithms, by Alfred.
Can be used as a filter for general DNA short read mapping.Carnegie Mellon University, graduating IN 2017, iN progress.Chapter 9 strings 367, chapter 10 pointers AND dynamic arrays 419.Chapter 18 exception handling 825, chapter 19 standard template library 857.PDF Article, supplementary Materials, poster PDF, shifted Hamming Distance: A Fast and Accurate simd-Friendly Filter for Local Alignment in Read Mapping.Contact Email hxin at cmu.A Primer of Genome Science, by Greg Gibson and Spencer.
My primary field of research is Bioinformatics with casual crossovers to computer architecture and system research.
Algorithm Design, by Jon Kleinberg and Éva Tardos.
War file firefox setup 20.0.1 exe and Peace, by Leo Tolstoy.
I also developed a novel mapping strategy to more efficiently map linked reads and integrated the new algorithm into the mapper snap.A memory mechanism that efficiently identifies and compresses data with similar patterns.Soup of life Wealth of Nations, by Adam Smith.Summer 2014 favorite readings Bread and butter Absolute C, Walter Savitch.Chapter 20 patterns AND UML (online at m/savitch).Hongyi Xin, John Greth, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu, a simd-friendly algorithm that approximates the edit-distance calculation using bit-vectors.Chapter 11 separate compilation AND namespaces 471.Appendix 5 OLD AND NEW header files 929.A mechanism to reduce cache pollution caused by inaccurate prefetching.An extension to the dynamic-programming algorithm, the Landau-Vishkin algorithm, to support custom gap penalties.Rivest, and Clifford Stein.